mod_initialize.t

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!> This module handles the initialization of various components of amrvac
module mod_initialize
  use mod_comm_lib, only: mpistop
 
  implicit none
  private
 
  logical :: initialized_already = .false.
 
  ! Public methods
  public :: initialize_amrvac
 
contains
 
  !> Initialize amrvac: read par files and initialize variables
  subroutine initialize_amrvac()
    use mod_global_parameters
    use mod_input_output
    use mod_physics, only: phys_check, phys_check_params
    use mod_usr_methods, only: usr_set_parameters
    use mod_bc_data, only: bc_data_init
    use mod_init_datafromfile, only: read_data_init
    use mod_comm_lib, only: init_comm_types
 
    if (initialized_already) return
 
    ! add auxiliary variable(s) to update boundary ghost cells
    nwgc=nwgc+nwaux
 
    ! Check whether the user has loaded a physics module
    call phys_check()
 
    ! Read input files
    call read_par_files()
    call initialize_vars()
    call init_comm_types()
 
    ! Possibly load boundary condition data or initial data
    call bc_data_init()
    call read_data_init()
 
    if(associated(usr_set_parameters)) call usr_set_parameters()
 
    call phys_check_params()
 
    initialized_already = .true.
  end subroutine initialize_amrvac
 
  !> Initialize (and allocate) simulation and grid variables
  subroutine initialize_vars
    use mod_forest
    use mod_global_parameters
    use mod_ghostcells_update
    use mod_fix_conserve, only: pflux
    use mod_amr_fct, only: pface, fine_neighbors, old_neighbor
    use mod_geometry
 
    integer :: igrid, level, ipe, ig^D
    logical :: ok
 
    allocate(ps(max_blocks))
    allocate(ps1(max_blocks))
    allocate(ps2(max_blocks))
    allocate(ps3(max_blocks))
    allocate(ps4(max_blocks))
    allocate(psc(max_blocks))
    allocate(ps_sub(max_blocks))
    allocate(neighbor(2,-1:1^d&,max_blocks),neighbor_child(2,0:3^d&,max_blocks))
    allocate(neighbor_type(-1:1^d&,max_blocks),neighbor_active(-1:1^d&,max_blocks))
    allocate(neighbor_pole(-1:1^d&,max_blocks))
    allocate(igrids(max_blocks),igrids_active(max_blocks),igrids_passive(max_blocks))
    allocate(rnode(rnodehi,max_blocks),rnode_sub(rnodehi,max_blocks))
    allocate(node(nodehi,max_blocks),node_sub(nodehi,max_blocks),phyboundblock(max_blocks))
    allocate(pflux(2,^nd,max_blocks))
    ! allocate mesh for particles
    if(use_particles) allocate(gridvars(max_blocks))
    if(stagger_grid) then
      allocate(pface(2,^nd,max_blocks),fine_neighbors(2^d&,^nd,max_blocks))
      allocate(old_neighbor(2,-1:1^d,max_blocks))
    end if
 
    it=it_init
    global_time=time_init
 
    dt=zero
 
    ! no poles initially
    neighbor_pole=0
 
    ! check resolution
    if ({mod(ixghi^d,2)/=0|.or.}) then
       call mpistop("mesh widths must give even number grid points")
    end if
    ixm^ll=ixg^ll^lsubnghostcells;
 
    if (nbufferx^d>(ixmhi^d-ixmlo^d+1)|.or.) then
       write(unitterm,*) "nbufferx^D bigger than mesh size makes no sense."
       write(unitterm,*) "Decrease nbufferx or increase mesh size"
       call mpistop("")
    end if
 
    ! initialize dx arrays on finer (>1) levels
    do level=2,refine_max_level
       {dx(^d,level) = dx(^d,level-1) * half\}  ! refine ratio 2
    end do
 
    ! domain decomposition
    ! physical extent of a grid block at level 1, per dimension
    ^d&dg^d(1)=dx(^d,1)*dble(block_nx^d)\
    ! number of grid blocks at level 1 in simulation domain, per dimension
    ^d&ng^d(1)=nint((xprobmax^d-xprobmin^d)/dg^d(1))\
    ! total number of grid blocks at level 1
    nglev1={ng^d(1)*}
 
    do level=2,refine_max_level
       dg^d(level)=half*dg^d(level-1);
       ng^d(level)=ng^d(level-1)*2;
    end do
 
    ! check that specified stepsize correctly divides domain
    ok=({(abs(dble(ng^d(1))*dg^d(1)-(xprobmax^d-xprobmin^d))<=smalldouble)|.and.})
    if (.not.ok) then
       write(unitterm,*)"domain cannot be divided by meshes of given gridsize"
       call mpistop("domain cannot be divided by meshes of given gridsize")
    end if
 
    poleb=.false.
    if (.not.slab) call set_pole
 
    ! number of grid blocks at level 1 along a dimension, which does not have a pole or periodic boundary, 
    ! must be larger than 1 for a rectangular AMR mesh
    if(({ng^d(1)/=1|.or.}).and.refine_max_level>1) then
      {
      if(ng^d(1)==1.and..not.poleb(1,^d).and.&
         .not.poleb(2,^d).and..not.periodb(^d).and..not.aperiodb(^d)) then
        write(unitterm,"(a,i2,a)") "number of grid blocks at level 1 in dimension",^d,&
                          " be larger than 1 for a rectangular AMR mesh!"
        write(unitterm,"(a,i1)") "increase domain_nx",^d
        call mpistop("")
      end if
      \}
    end if
 
    ! initialize connectivity data
    igridstail=0
 
    ! allocate memory for forest data structures
    allocate(level_head(refine_max_level),level_tail(refine_max_level))
    do level=1,refine_max_level
       nullify(level_head(level)%node,level_tail(level)%node)
    end do
 
    allocate(igrid_to_node(max_blocks,0:npe-1))
    do ipe=0,npe-1
       do igrid=1,max_blocks
          nullify(igrid_to_node(igrid,ipe)%node)
       end do
    end do
 
    allocate(sfc(1:3,max_blocks*npe))
 
    allocate(igrid_to_sfc(max_blocks))
 
    sfc=0
    allocate(morton_start(0:npe-1),morton_stop(0:npe-1))
    allocate(morton_sub_start(0:npe-1),morton_sub_stop(0:npe-1))
 
    allocate(nleafs_level(1:nlevelshi))
 
    allocate(coarsen(max_blocks,0:npe-1),refine(max_blocks,0:npe-1))
    coarsen=.false.
    refine=.false.
    if (nbufferx^d/=0|.or.) then
       allocate(buffer(max_blocks,0:npe-1))
       buffer=.false.
    end if
    allocate(igrid_inuse(max_blocks,0:npe-1))
    igrid_inuse=.false.
 
    allocate(tree_root(1:ng^d(1)))
    {do ig^db=1,ng^db(1)\}
    nullify(tree_root(ig^d)%node)
    {end do\}
 
    ! define index ranges and MPI send/receive derived datatype for ghost-cell swap
    call init_bc()
    type_send_srl=>type_send_srl_f
    type_recv_srl=>type_recv_srl_f
    type_send_r=>type_send_r_f
    type_recv_r=>type_recv_r_f
    type_send_p=>type_send_p_f
    type_recv_p=>type_recv_p_f
    call create_bc_mpi_datatype(iwstart,nwgc)
 
  end subroutine initialize_vars
 
 
end module mod_initialize