Module for reading input and writing output. More...

Functions/Subroutines
subroutine	read_arguments ()
	Read the command line arguments passed to amrvac. More...

subroutine	read_par_files ()
	Read in the user-supplied parameter-file. More...

subroutine	get_fields_string (line, delims, n_max, fields, n_found, fully_read)
	Routine to find entries in a string. More...

subroutine	saveamrfile (ifile)

subroutine	create_output_file (fh, ix, extension, suffix)
	Standard method for creating a new output file. More...

logical function	snapshot_exists (ix)

integer function	get_snapshot_index (filename)

subroutine	snapshot_write_header (fh, offset_tree, offset_block)
	Write header for a snapshot. More...

subroutine	snapshot_read_header (fh, offset_tree, offset_block)
	Read header for a snapshot. More...

pure integer function	count_ix (ixOL)
	Compute number of elements in index range. More...

subroutine	block_shape_io (igrid, n_ghost, ixOL, n_values)
	Determine the shape of a block for output (whether to include ghost cells, and on which sides) More...

subroutine	write_snapshot

subroutine	read_snapshot
	Routine to read in snapshots (.dat files). When it cannot recognize the file version, it will automatically try the 'old' reader. More...

subroutine	read_snapshot_old ()

subroutine	printlog_default
	Write volume-averaged values and other information to the log file. More...

subroutine	printlog_regression_test ()
	Print a log that can be used to check whether the code still produces the same output (regression test) More...

subroutine	get_volume_average (power, mode, volume)
	Compute mean(w**power) over the leaves of the grid. The first mode (power=1) corresponds to the mean, the second to the mean squared values and so on. More...

subroutine	get_volume_coverage (vol_cov)
	Compute how much of the domain is covered by each grid level. This routine does not take a non-Cartesian geometry into account. More...

subroutine	get_volume_average_func (func, f_avg, volume)
	Compute the volume average of func(w) over the leaves of the grid. More...

subroutine	get_global_maxima (wmax)
	Compute global maxima of iw variables over the leaves of the grid. More...

subroutine	get_global_minima (wmin)
	Compute global minima of iw variables over the leaves of the grid. More...

Variables
integer, parameter	version_number = 5
	Version number of the .dat file output. More...

integer, dimension(3), parameter	compatible_versions = [3, 4, 5]
	List of compatible versions. More...

integer	nw_found
	number of w found in dat files More...

character(len= *), parameter	fmt_r = 'es16.8'

character(len= *), parameter	fmt_r2 = 'es10.2'

character(len= *), parameter	fmt_i = 'i8'

Detailed Description

Module for reading input and writing output.

Function/Subroutine Documentation

◆ block_shape_io()

subroutine mod_input_output::block_shape_io	(	integer, intent(in)	igrid,
		integer, dimension(2*ndim), intent(out)	n_ghost,
		integer, intent(out)	ixO,
		integer, intent(out)	L,
		integer, intent(out)	n_values
	)

Determine the shape of a block for output (whether to include ghost cells, and on which sides)

Parameters

[out]	n_ghost	nghost(1:ndim) contains the number of ghost cells on the block's minimum boundaries, and nghost(ndim+1:2*ndim) on the block's maximum boundaries
[out]	ixo	Index range on output block
[out]	l	Index range on output block
[out]	n_values	Number of cells/values in output

Definition at line 1480 of file mod_input_output.t.

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◆ count_ix()

pure integer function mod_input_output::count_ix	(	integer, intent(in)	ixO,
		integer, intent(in)	L
	)

Compute number of elements in index range.

Definition at line 1472 of file mod_input_output.t.

◆ create_output_file()

subroutine mod_input_output::create_output_file	(	integer, intent(out)	fh,
		integer, intent(in)	ix,
		character(len=*), intent(in)	extension,
		character(len=*), intent(in), optional	suffix
	)

Standard method for creating a new output file.

Parameters

[out]	fh	File handle
[in]	ix	Index of file
[in]	extension	Extension of file
[in]	suffix	Optional suffix

Definition at line 1169 of file mod_input_output.t.

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◆ get_fields_string()

subroutine mod_input_output::get_fields_string	(	character(len=*), intent(in)	line,
		character(len=*), intent(in)	delims,
		integer, intent(in)	n_max,
		character(len=*), dimension(n_max), intent(inout)	fields,
		integer, intent(inout)	n_found,
		logical, intent(out), optional	fully_read
	)

Routine to find entries in a string.

Parameters

[in]	line	The line from which we want to read
[in]	delims	A string with delimiters. For example delims = " ,'"""//char(9)
[in]	n_max	Maximum number of entries to read in
[in,out]	n_found	Number of entries found
[in,out]	fields	Fields in the strings

Definition at line 1067 of file mod_input_output.t.

◆ get_global_maxima()

subroutine mod_input_output::get_global_maxima ( double precision, dimension(nw), intent(out) wmax )

Compute global maxima of iw variables over the leaves of the grid.

Parameters

[out] wmax The global maxima

Definition at line 2300 of file mod_input_output.t.

◆ get_global_minima()

subroutine mod_input_output::get_global_minima ( double precision, dimension(nw), intent(out) wmin )

Compute global minima of iw variables over the leaves of the grid.

Parameters

[out] wmin The global maxima

Definition at line 2327 of file mod_input_output.t.

◆ get_snapshot_index()

integer function mod_input_output::get_snapshot_index ( character(len=*), intent(in) filename )

Definition at line 1214 of file mod_input_output.t.

◆ get_volume_average()

subroutine mod_input_output::get_volume_average	(	integer, intent(in)	power,
		double precision, dimension(nw), intent(out)	mode,
		double precision, intent(out)	volume
	)

Compute mean(w**power) over the leaves of the grid. The first mode (power=1) corresponds to the mean, the second to the mean squared values and so on.

Parameters

[in]	power	Which mode to compute
[out]	mode	The computed mode
[out]	volume	The total grid volume

Definition at line 2193 of file mod_input_output.t.

◆ get_volume_average_func()

subroutine mod_input_output::get_volume_average_func	(		func,
		double precision, intent(out)	f_avg,
		double precision, intent(out)	volume
	)

Compute the volume average of func(w) over the leaves of the grid.

Parameters

[out]	f_avg	The volume average of func
[out]	volume	The total grid volume

Definition at line 2257 of file mod_input_output.t.

◆ get_volume_coverage()

subroutine mod_input_output::get_volume_coverage ( double precision, dimension(1:refine_max_level), intent(out) vol_cov )

Compute how much of the domain is covered by each grid level. This routine does not take a non-Cartesian geometry into account.

Definition at line 2231 of file mod_input_output.t.

◆ printlog_default()

subroutine mod_input_output::printlog_default ( )

Write volume-averaged values and other information to the log file.

Definition at line 2032 of file mod_input_output.t.

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◆ printlog_regression_test()

subroutine mod_input_output::printlog_regression_test ( )

Print a log that can be used to check whether the code still produces the same output (regression test)

Definition at line 2163 of file mod_input_output.t.

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◆ read_arguments()

subroutine mod_input_output::read_arguments ( )

Read the command line arguments passed to amrvac.

Todo:: Document these command line options

Definition at line 25 of file mod_input_output.t.

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◆ read_par_files()

subroutine mod_input_output::read_par_files ( )

Read in the user-supplied parameter-file.

Definition at line 102 of file mod_input_output.t.

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◆ read_snapshot()

subroutine mod_input_output::read_snapshot ( )

Routine to read in snapshots (.dat files). When it cannot recognize the file version, it will automatically try the 'old' reader.

Definition at line 1695 of file mod_input_output.t.

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◆ read_snapshot_old()

subroutine mod_input_output::read_snapshot_old ( )

Definition at line 1893 of file mod_input_output.t.

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◆ saveamrfile()

subroutine mod_input_output::saveamrfile ( integer ifile )

Definition at line 1115 of file mod_input_output.t.

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◆ snapshot_exists()

logical function mod_input_output::snapshot_exists ( integer, intent(in) ix )

Parameters

[in] ix Index of snapshot

Definition at line 1205 of file mod_input_output.t.

◆ snapshot_read_header()

subroutine mod_input_output::snapshot_read_header	(	integer, intent(in)	fh,
		integer(mpi_offset_kind), intent(out)	offset_tree,
		integer(mpi_offset_kind), intent(out)	offset_block
	)

Read header for a snapshot.

If you edit the header, don't forget to update: snapshot_write_header(), snapshot_read_header(), doc/fileformat.md, tools/python/dat_reader.py

Parameters

[in]	fh	File handle
[out]	offset_tree	Offset of tree info
[out]	offset_block	Offset of block data

Definition at line 1300 of file mod_input_output.t.

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◆ snapshot_write_header()

subroutine mod_input_output::snapshot_write_header	(	integer, intent(in)	fh,
		integer(kind=mpi_offset_kind), intent(in)	offset_tree,
		integer(kind=mpi_offset_kind), intent(in)	offset_block
	)

Write header for a snapshot.

If you edit the header, don't forget to update: snapshot_write_header(), snapshot_read_header(), doc/fileformat.md, tools/python/dat_reader.py

Parameters

[in]	fh	File handle
[in]	offset_tree	Offset of tree info
[in]	offset_block	Offset of block data

Definition at line 1227 of file mod_input_output.t.

◆ write_snapshot()

subroutine mod_input_output::write_snapshot ( )

Definition at line 1512 of file mod_input_output.t.

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Variable Documentation

◆ compatible_versions

integer, dimension(3), parameter mod_input_output::compatible_versions = [3, 4, 5]

List of compatible versions.

Definition at line 11 of file mod_input_output.t.

◆ fmt_i

character(len=*), parameter mod_input_output::fmt_i = 'i8'

Definition at line 19 of file mod_input_output.t.

◆ fmt_r

character(len=*), parameter mod_input_output::fmt_r = 'es16.8'

Definition at line 17 of file mod_input_output.t.

◆ fmt_r2

character(len=*), parameter mod_input_output::fmt_r2 = 'es10.2'

Definition at line 18 of file mod_input_output.t.

◆ nw_found

integer mod_input_output::nw_found

number of w found in dat files

Definition at line 14 of file mod_input_output.t.

◆ version_number

integer, parameter mod_input_output::version_number = 5

Version number of the .dat file output.

Definition at line 8 of file mod_input_output.t.

Functions/Subroutines

Variables

Detailed Description

Function/Subroutine Documentation

◆ block_shape_io()

◆ count_ix()

◆ create_output_file()

◆ get_fields_string()

◆ get_global_maxima()

◆ get_global_minima()

◆ get_snapshot_index()

◆ get_volume_average()

◆ get_volume_average_func()

◆ get_volume_coverage()

◆ printlog_default()

◆ printlog_regression_test()

◆ read_arguments()

◆ read_par_files()

◆ read_snapshot()

◆ read_snapshot_old()

◆ saveamrfile()

◆ snapshot_exists()

◆ snapshot_read_header()

◆ snapshot_write_header()

◆ write_snapshot()

Variable Documentation

◆ compatible_versions

◆ fmt_i

◆ fmt_r

◆ fmt_r2

◆ nw_found

◆ version_number