Magneto-hydrodynamics module. More...

Functions/Subroutines
subroutine	mhd_write_info (fh)
	Write this module's parameters to a snapsoht. More...

subroutine	mhd_angmomfix (fC, x, wnew, ixIL, ixOL, idim)

subroutine, public	mhd_phys_init ()

subroutine	mhd_check_params

subroutine	mhd_physical_units ()

subroutine	mhd_check_w (primitive, ixIL, ixOL, w, flag)

subroutine, public	mhd_to_conserved (ixIL, ixOL, w, x)
	Transform primitive variables into conservative ones. More...

subroutine, public	mhd_to_primitive (ixIL, ixOL, w, x)
	Transform conservative variables into primitive ones. More...

subroutine	mhd_ei_to_e (ixIL, ixOL, w, x)
	Transform internal energy to total energy. More...

subroutine	mhd_e_to_ei (ixIL, ixOL, w, x)
	Transform total energy to internal energy. More...

subroutine	mhd_ei_to_e_aux (ixIL, ixOL, w, x)
	Update eaux and transform internal energy to total energy. More...

subroutine	mhd_e_to_ei_aux (ixIL, ixOL, w, x)
	Transform total energy to internal energy via eaux as internal energy. More...

subroutine	mhd_energy_synchro (ixIL, ixOL, w, x)

subroutine	mhd_handle_small_values (primitive, w, x, ixIL, ixOL, subname)

subroutine	e_to_rhos (ixIL, ixOL, w, x)
	Convert energy to entropy. More...

subroutine	rhos_to_e (ixIL, ixOL, w, x)
	Convert entropy to energy. More...

subroutine, public	mhd_get_v (w, x, ixIL, ixOL, v)
	Calculate v vector. More...

subroutine, public	mhd_get_v_idim (w, x, ixIL, ixOL, idim, v)
	Calculate v component. More...

subroutine	mhd_get_cmax (w, x, ixIL, ixOL, idim, cmax)
	Calculate cmax_idim=csound+abs(v_idim) within ixO^L. More...

subroutine	mhd_get_a2max (w, x, ixIL, ixOL, a2max)

subroutine	mhd_get_tcutoff (ixIL, ixOL, w, x, Tco_local, Tmax_local)
	get adaptive cutoff temperature for TRAC (Johnston 2019 ApJL, 873, L22) More...

subroutine	mhd_get_cbounds (wLC, wRC, wLp, wRp, x, ixIL, ixOL, idim, cmax, cmin)
	Estimating bounds for the minimum and maximum signal velocities. More...

subroutine	mhd_get_csound (w, x, ixIL, ixOL, idim, csound)
	Calculate fast magnetosonic wave speed. More...

subroutine	mhd_get_csound_prim (w, x, ixIL, ixOL, idim, csound)
	Calculate fast magnetosonic wave speed. More...

subroutine, public	mhd_get_pthermal (w, x, ixIL, ixOL, pth)
	Calculate thermal pressure=(gamma-1)(e-0.5m2/rho-b2/2) within ixO^L. More...

subroutine	mhd_get_temperature_from_eint (w, x, ixIL, ixOL, res)
	Calculate temperature=p/rho when in e_ the internal energy is stored. More...

subroutine	mhd_get_temperature_from_etot (w, x, ixIL, ixOL, res)
	Calculate temperature=p/rho when in e_ the total energy is stored this does not check the values of mhd_energy and mhd_internal_e, mhd_energy = .true. and mhd_internal_e = .false. also check small_values is avoided. More...

subroutine, public	mhd_get_csound2 (w, x, ixIL, ixOL, csound2)
	Calculate the square of the thermal sound speed csound2 within ixO^L. csound2=gamma*p/rho. More...

subroutine	mhd_get_p_total (w, x, ixIL, ixOL, p)
	Calculate total pressure within ixO^L including magnetic pressure. More...

subroutine	mhd_get_flux (wC, w, x, ixIL, ixOL, idim, f)
	Calculate fluxes within ixO^L. More...

subroutine	add_source_ambipolar_internal_energy (qdt, ixIL, ixOL, wCT, w, x, ie)
	Source terms J.E in internal energy. For the ambipolar term E = ambiCoef * JxBxB=ambiCoef * B^2(-J_perpB) More...

subroutine	mhd_get_jxbxb (w, x, ixIL, ixOL, res)

subroutine	sts_set_source_ambipolar (ixIL, ixOL, w, x, wres, fix_conserve_at_step, my_dt, igrid, nflux)
	Sets the sources for the ambipolar this is used for the STS method. More...

subroutine	update_faces_ambipolar (ixIL, ixOL, w, x, ECC, fE, circ)
	get ambipolar electric field and the integrals around cell faces More...

subroutine	get_flux_on_cell_face (ixIL, ixOL, ff, src)
	use cell-center flux to get cell-face flux and get the source term as the divergence of the flux More...

double precision function	get_ambipolar_dt (w, ixIL, ixOL, dxD, x)
	Calculates the explicit dt for the ambipokar term This function is used by both explicit scheme and STS method. More...

subroutine, public	multiplyambicoef (ixIL, ixOL, res, w, x)
	multiply res by the ambipolar coefficient The ambipolar coefficient is calculated as -mhd_eta_ambi/rho^2 The user may mask its value in the user file by implemneting usr_mask_ambipolar subroutine More...

subroutine	mhd_add_source (qdt, ixIL, ixOL, wCT, w, x, qsourcesplit, active)
	w[iws]=w[iws]+qdt*S[iws,wCT] where S is the source based on wCT within ixO More...

subroutine	boris_add_source (qdt, ixIL, ixOL, wCT, w, x, qsourcesplit, active)

subroutine	get_lorentz (ixIL, ixOL, w, JxB)
	Compute the Lorentz force (JxB) More...

subroutine	mhd_gamma2_alfven (ixIL, ixOL, w, gamma_A2)
	Compute 1/(1+v_A^2/c^2) for Boris' approximation, where v_A is the Alfven velocity. More...

double precision function, dimension(ixo^s)	mhd_gamma_alfven (w, ixIL, ixOL)
	Compute 1/sqrt(1+v_A^2/c^2) for Boris simplification, where v_A is the Alfven velocity. More...

subroutine	internal_energy_add_source (qdt, ixIL, ixOL, wCT, w, x, ie)

subroutine	mhd_handle_small_ei (w, x, ixIL, ixOL, ie, subname)
	handle small or negative internal energy More...

subroutine	add_source_b0split (qdt, ixIL, ixOL, wCT, w, x)
	Source terms after split off time-independent magnetic field. More...

subroutine	add_source_res1 (qdt, ixIL, ixOL, wCT, w, x)
	Add resistive source to w within ixO Uses 3 point stencil (1 neighbour) in each direction, non-conservative. If the fourthorder precompiler flag is set, uses fourth order central difference for the laplacian. Then the stencil is 5 (2 neighbours). More...

subroutine	add_source_res2 (qdt, ixIL, ixOL, wCT, w, x)
	Add resistive source to w within ixO Uses 5 point stencil (2 neighbours) in each direction, conservative. More...

subroutine	add_source_hyperres (qdt, ixIL, ixOL, wCT, w, x)
	Add Hyper-resistive source to w within ixO Uses 9 point stencil (4 neighbours) in each direction. More...

subroutine	add_source_glm (qdt, ixIL, ixOL, wCT, w, x)

subroutine	add_source_powel (qdt, ixIL, ixOL, wCT, w, x)
	Add divB related sources to w within ixO corresponding to Powel. More...

subroutine	add_source_janhunen (qdt, ixIL, ixOL, wCT, w, x)

subroutine	add_source_linde (qdt, ixIL, ixOL, wCT, w, x)

subroutine, public	get_divb (w, ixIL, ixOL, divb, fourthorder)
	Calculate div B within ixO. More...

subroutine, public	get_normalized_divb (w, ixIL, ixOL, divb)
	get dimensionless div B = \|divB\| * volume / area / \|B\| More...

subroutine, public	get_current (w, ixIL, ixOL, idirmin, current)
	Calculate idirmin and the idirmin:3 components of the common current array make sure that dxlevel(^D) is set correctly. More...

subroutine	mhd_get_dt (w, ixIL, ixOL, dtnew, dxD, x)
	If resistivity is not zero, check diffusion time limit for dt. More...

subroutine	mhd_add_source_geom (qdt, ixIL, ixOL, wCT, w, x)

double precision function, dimension(ixo^s), public	mhd_mag_en_all (w, ixIL, ixOL)
	Compute 2 times total magnetic energy. More...

double precision function, dimension(ixo^s)	mhd_mag_i_all (w, ixIL, ixOL, idir)
	Compute full magnetic field by direction. More...

double precision function, dimension(ixo^s)	mhd_mag_en (w, ixIL, ixOL)
	Compute evolving magnetic energy. More...

double precision function, dimension(ixo^s), public	mhd_kin_en (w, ixIL, ixOL, inv_rho)
	compute kinetic energy More...

subroutine	mhd_getv_hall (w, x, ixIL, ixOL, vHall)

subroutine	mhd_get_jambi (w, x, ixIL, ixOL, res)

subroutine	mhd_getdt_hall (w, x, ixIL, ixOL, dxD, dthall)

subroutine	mhd_modify_wlr (ixIL, ixOL, qt, wLC, wRC, wLp, wRp, s, idir)

subroutine	mhd_boundary_adjust

subroutine	fixdivb_boundary (ixGL, ixOL, w, x, iB)

subroutine, public	mhd_clean_divb_multigrid (qdt, qt, active)

subroutine	mhd_update_faces (ixIL, ixOL, qt, qdt, wprim, fC, fE, sCT, s)

subroutine	update_faces_average (ixIL, ixOL, qt, qdt, fC, fE, sCT, s)
	get electric field though averaging neighors to update faces in CT More...

subroutine	update_faces_contact (ixIL, ixOL, qt, qdt, wp, fC, fE, sCT, s)
	update faces using UCT contact mode by Gardiner and Stone 2005 JCP 205, 509 More...

subroutine	update_faces_hll (ixIL, ixOL, qt, qdt, fE, sCT, s)
	update faces More...

subroutine	get_resistive_electric_field (ixIL, ixOL, sCT, s, jce)
	calculate eta J at cell edges More...

subroutine	get_ambipolar_electric_field (ixIL, ixOL, w, x, fE)
	get ambipolar electric field on cell edges More...

subroutine, public	mhd_face_to_center (ixOL, s)
	calculate cell-center values from face-center values More...

subroutine, public	b_from_vector_potential (ixIsL, ixIL, ixOL, ws, x)
	calculate magnetic field from vector potential More...

Variables
logical, public, protected	mhd_energy = .true.
	Whether an energy equation is used. More...

logical, public, protected	mhd_thermal_conduction = .false.
	Whether thermal conduction is used. More...

logical, public, protected	mhd_radiative_cooling = .false.
	Whether radiative cooling is added. More...

logical, public, protected	mhd_viscosity = .false.
	Whether viscosity is added. More...

logical, public, protected	mhd_gravity = .false.
	Whether gravity is added. More...

logical, public, protected	mhd_hall = .false.
	Whether Hall-MHD is used. More...

logical, public, protected	mhd_ambipolar = .false.
	Whether Ambipolar term is used. More...

logical, public, protected	mhd_ambipolar_sts = .false.
	Whether Ambipolar term is implemented using supertimestepping. More...

logical, public, protected	mhd_ambipolar_exp = .false.
	Whether Ambipolar term is implemented explicitly. More...

logical, public, protected	mhd_particles = .false.
	Whether particles module is added. More...

logical, public, protected	mhd_magnetofriction = .false.
	Whether magnetofriction is added. More...

logical, public, protected	mhd_glm = .false.
	Whether GLM-MHD is used. More...

logical, public, protected	mhd_trac = .false.
	Whether TRAC method is used. More...

integer, public, protected	mhd_trac_type =1
	Which TRAC method is used. More...

double precision, public, protected	mhd_trac_mask = 0.d0
	Height of the mask used in the TRAC method. More...

integer, public, protected	mhd_trac_finegrid =4
	Distance between two adjacent traced magnetic field lines (in finest cell size) More...

logical, public, protected	mhd_solve_eaux = .false.
	Whether auxiliary internal energy is solved. More...

logical, public, protected	mhd_internal_e = .false.
	Whether internal energy is solved instead of total energy. More...

logical, public, protected	source_split_divb = .false.
	Whether divB cleaning sources are added splitting from fluid solver. More...

double precision, public	mhd_glm_alpha = 0.5d0
	GLM-MHD parameter: ratio of the diffusive and advective time scales for div b taking values within [0, 1]. More...

logical, public, protected	mhd_4th_order = .false.
	MHD fourth order. More...

integer, public, protected	mhd_n_tracer = 0
	Number of tracer species. More...

integer, public, protected	rho_
	Index of the density (in the w array) More...

integer, dimension(:), allocatable, public, protected	mom
	Indices of the momentum density. More...

integer, public, protected	e_
	Index of the energy density (-1 if not present) More...

integer, public, protected	p_
	Index of the gas pressure (-1 if not present) should equal e_. More...

integer, dimension(:), allocatable, public, protected	mag
	Indices of the magnetic field. More...

integer, public, protected	psi_
	Indices of the GLM psi. More...

integer, public, protected	eaux_
	Indices of auxiliary internal energy. More...

integer, public, protected	paux_

integer, public, protected	tcoff_
	Index of the cutoff temperature for the TRAC method. More...

integer, public, protected	tweight_

integer, dimension(:), allocatable, public, protected	tracer
	Indices of the tracers. More...

double precision, public	mhd_gamma = 5.d0/3.0d0
	The adiabatic index. More...

double precision, public	mhd_adiab = 1.0d0
	The adiabatic constant. More...

double precision, public	mhd_eta = 0.0d0
	The MHD resistivity. More...

double precision, public	mhd_eta_hyper = 0.0d0
	The MHD hyper-resistivity. More...

double precision, public	mhd_etah = 0.0d0
	TODO: what is this? More...

double precision, public	mhd_eta_ambi = 0.0d0
	The MHD ambipolar coefficient. More...

character(len=std_len), public, protected	typedivbfix = 'linde'
	Method type to clean divergence of B. More...

character(len=std_len), public, protected	type_ct = 'uct_contact'
	Method type of constrained transport. More...

logical, public, protected	mhd_divb_4thorder = .false.
	Whether divB is computed with a fourth order approximation. More...

logical, public	divbwave = .true.
	Add divB wave in Roe solver. More...

logical, public	clean_initial_divb = .false.
	clean initial divB More...

double precision, public, protected	he_abundance =0.1d0
	Helium abundance over Hydrogen. More...

logical, dimension(2 *^nd), public, protected	boundary_divbfix =.true.
	To control divB=0 fix for boundary. More...

integer, dimension(2 *^nd), public, protected	boundary_divbfix_skip =0
	To skip * layer of ghost cells during divB=0 fix for boundary. More...

logical, public, protected	b0field_forcefree =.true.
	B0 field is force-free. More...

procedure(mask_subroutine), pointer, public	usr_mask_ambipolar => null()

Detailed Description

Magneto-hydrodynamics module.

Function/Subroutine Documentation

◆ add_source_ambipolar_internal_energy()

subroutine mod_mhd_phys::add_source_ambipolar_internal_energy	(	double precision, intent(in)	qdt,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	wCT,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ie
	)

Source terms J.E in internal energy. For the ambipolar term E = ambiCoef * JxBxB=ambiCoef * B^2(-J_perpB)

ambiCoef is calculated as mhd_ambi_coef/rho^2, see also the subroutine mhd_get_Jambi

Definition at line 1700 of file mod_mhd_phys.t.

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◆ add_source_b0split()

subroutine mod_mhd_phys::add_source_b0split	(	double precision, intent(in)	qdt,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	wCT,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

Source terms after split off time-independent magnetic field.

Definition at line 2308 of file mod_mhd_phys.t.

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◆ add_source_glm()

subroutine mod_mhd_phys::add_source_glm	(	double precision, intent(in)	qdt,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	wCT,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

Definition at line 2592 of file mod_mhd_phys.t.

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◆ add_source_hyperres()

subroutine mod_mhd_phys::add_source_hyperres	(	double precision, intent(in)	qdt,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	wCT,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

Add Hyper-resistive source to w within ixO Uses 9 point stencil (4 neighbours) in each direction.

Definition at line 2536 of file mod_mhd_phys.t.

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◆ add_source_janhunen()

subroutine mod_mhd_phys::add_source_janhunen	(	double precision, intent(in)	qdt,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	wCT,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

Definition at line 2681 of file mod_mhd_phys.t.

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◆ add_source_linde()

subroutine mod_mhd_phys::add_source_linde	(	double precision, intent(in)	qdt,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	wCT,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

Definition at line 2704 of file mod_mhd_phys.t.

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◆ add_source_powel()

subroutine mod_mhd_phys::add_source_powel	(	double precision, intent(in)	qdt,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	wCT,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

Add divB related sources to w within ixO corresponding to Powel.

Definition at line 2646 of file mod_mhd_phys.t.

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◆ add_source_res1()

subroutine mod_mhd_phys::add_source_res1	(	double precision, intent(in)	qdt,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	wCT,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

Add resistive source to w within ixO Uses 3 point stencil (1 neighbour) in each direction, non-conservative. If the fourthorder precompiler flag is set, uses fourth order central difference for the laplacian. Then the stencil is 5 (2 neighbours).

Definition at line 2361 of file mod_mhd_phys.t.

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◆ add_source_res2()

subroutine mod_mhd_phys::add_source_res2	(	double precision, intent(in)	qdt,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	wCT,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

Add resistive source to w within ixO Uses 5 point stencil (2 neighbours) in each direction, conservative.

Definition at line 2474 of file mod_mhd_phys.t.

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◆ b_from_vector_potential()

subroutine, public mod_mhd_phys::b_from_vector_potential	(	integer, intent(in)	ixIs,
		integer, intent(in)	L,
		integer, intent(in)	ixI,
			L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixis^s,1:nws), intent(inout)	ws,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

calculate magnetic field from vector potential

Definition at line 4446 of file mod_mhd_phys.t.

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◆ boris_add_source()

subroutine mod_mhd_phys::boris_add_source	(	double precision, intent(in)	qdt,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	wCT,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		logical, intent(in)	qsourcesplit,
		logical, intent(inout)	active
	)

Definition at line 2161 of file mod_mhd_phys.t.

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◆ e_to_rhos()

subroutine mod_mhd_phys::e_to_rhos	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

Convert energy to entropy.

Definition at line 995 of file mod_mhd_phys.t.

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◆ fixdivb_boundary()

subroutine mod_mhd_phys::fixdivb_boundary	(	integer, intent(in)	ixG,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixg^s,1:nw), intent(inout)	w,
		double precision, dimension(ixg^s,1:ndim), intent(in)	x,
		integer, intent(in)	iB
	)

Definition at line 3290 of file mod_mhd_phys.t.

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◆ get_ambipolar_dt()

double precision function mod_mhd_phys::get_ambipolar_dt	(	double precision, dimension(ixi^s,1:nw), intent(in)	w,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, intent(in)	dx,
		double precision, intent(in)	D,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

Calculates the explicit dt for the ambipokar term This function is used by both explicit scheme and STS method.

Definition at line 1975 of file mod_mhd_phys.t.

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◆ get_ambipolar_electric_field()

subroutine mod_mhd_phys::get_ambipolar_electric_field	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		double precision, dimension(ixi^s,7-2*ndim:3), intent(out)	fE
	)

get ambipolar electric field on cell edges

Definition at line 4353 of file mod_mhd_phys.t.

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◆ get_current()

subroutine, public mod_mhd_phys::get_current	(	double precision, dimension(ixi^s,1:nw), intent(in)	w,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		integer, intent(out)	idirmin,
		double precision, dimension(ixi^s,7-2*ndir:3)	current
	)

Calculate idirmin and the idirmin:3 components of the common current array make sure that dxlevel(^D) is set correctly.

Definition at line 2844 of file mod_mhd_phys.t.

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◆ get_divb()

subroutine, public mod_mhd_phys::get_divb	(	double precision, dimension(ixi^s,1:nw), intent(in)	w,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s), intent(inout)	divb,
		logical, intent(in), optional	fourthorder
	)

Calculate div B within ixO.

Definition at line 2779 of file mod_mhd_phys.t.

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◆ get_flux_on_cell_face()

subroutine mod_mhd_phys::get_flux_on_cell_face	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(:^d&,:), intent(inout)	ff,
		double precision, dimension(ixi^s), intent(out)	src
	)

use cell-center flux to get cell-face flux and get the source term as the divergence of the flux

Definition at line 1920 of file mod_mhd_phys.t.

◆ get_lorentz()

subroutine mod_mhd_phys::get_lorentz	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	w,
		double precision, dimension(ixi^s,3), intent(inout)	JxB
	)

Compute the Lorentz force (JxB)

Definition at line 2189 of file mod_mhd_phys.t.

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◆ get_normalized_divb()

subroutine, public mod_mhd_phys::get_normalized_divb	(	double precision, dimension(ixi^s,1:nw), intent(in)	w,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s)	divb
	)

get dimensionless div B = |divB| * volume / area / |B|

Definition at line 2815 of file mod_mhd_phys.t.

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◆ get_resistive_electric_field()

subroutine mod_mhd_phys::get_resistive_electric_field	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		type(state), intent(in)	sCT,
		type(state), intent(in)	s,
		double precision, dimension(ixi^s,7-2*ndim:3)	jce
	)

calculate eta J at cell edges

Definition at line 4284 of file mod_mhd_phys.t.

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◆ internal_energy_add_source()

subroutine mod_mhd_phys::internal_energy_add_source	(	double precision, intent(in)	qdt,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	wCT,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ie
	)

Definition at line 2245 of file mod_mhd_phys.t.

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◆ mhd_add_source()

subroutine mod_mhd_phys::mhd_add_source	(	double precision, intent(in)	qdt,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	wCT,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		logical, intent(in)	qsourcesplit,
		logical, intent(inout)	active
	)

w[iws]=w[iws]+qdt*S[iws,wCT] where S is the source based on wCT within ixO

Definition at line 2020 of file mod_mhd_phys.t.

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◆ mhd_add_source_geom()

subroutine mod_mhd_phys::mhd_add_source_geom	(	double precision, intent(in)	qdt,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(inout)	wCT,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

Definition at line 2932 of file mod_mhd_phys.t.

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◆ mhd_angmomfix()

subroutine mod_mhd_phys::mhd_angmomfix	(	double precision, dimension(ixi^s,1:nwflux,1:ndim), intent(inout)	fC,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		double precision, dimension(ixi^s,1:nw), intent(inout)	wnew,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		integer, intent(in)	idim
	)

Definition at line 287 of file mod_mhd_phys.t.

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◆ mhd_boundary_adjust()

subroutine mod_mhd_phys::mhd_boundary_adjust ( )

Definition at line 3246 of file mod_mhd_phys.t.

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◆ mhd_check_params()

subroutine mod_mhd_phys::mhd_check_params ( )

Definition at line 675 of file mod_mhd_phys.t.

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◆ mhd_check_w()

subroutine mod_mhd_phys::mhd_check_w	(	logical, intent(in)	primitive,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,nw), intent(in)	w,
		logical, dimension(ixi^s,1:nw), intent(inout)	flag
	)

Definition at line 733 of file mod_mhd_phys.t.

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◆ mhd_clean_divb_multigrid()

subroutine, public mod_mhd_phys::mhd_clean_divb_multigrid	(	double precision, intent(in)	qdt,
		double precision, intent(in)	qt,
		logical, intent(inout)	active
	)

Parameters

[in]	qdt	Current time step
[in]	qt	Current time
[in,out]	active	Output if the source is active

Definition at line 3667 of file mod_mhd_phys.t.

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◆ mhd_e_to_ei()

subroutine mod_mhd_phys::mhd_e_to_ei	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s, nw), intent(inout)	w,
		double precision, dimension(ixi^s, 1:ndim), intent(in)	x
	)

Transform total energy to internal energy.

Definition at line 840 of file mod_mhd_phys.t.

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◆ mhd_e_to_ei_aux()

subroutine mod_mhd_phys::mhd_e_to_ei_aux	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s, nw), intent(inout)	w,
		double precision, dimension(ixi^s, 1:ndim), intent(in)	x
	)

Transform total energy to internal energy via eaux as internal energy.

Definition at line 873 of file mod_mhd_phys.t.

◆ mhd_ei_to_e()

subroutine mod_mhd_phys::mhd_ei_to_e	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s, nw), intent(inout)	w,
		double precision, dimension(ixi^s, 1:ndim), intent(in)	x
	)

Transform internal energy to total energy.

Definition at line 826 of file mod_mhd_phys.t.

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◆ mhd_ei_to_e_aux()

subroutine mod_mhd_phys::mhd_ei_to_e_aux	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s, nw), intent(inout)	w,
		double precision, dimension(ixi^s, 1:ndim), intent(in)	x
	)

Update eaux and transform internal energy to total energy.

Definition at line 858 of file mod_mhd_phys.t.

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◆ mhd_energy_synchro()

subroutine mod_mhd_phys::mhd_energy_synchro	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

Definition at line 883 of file mod_mhd_phys.t.

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◆ mhd_face_to_center()

subroutine, public mod_mhd_phys::mhd_face_to_center	(	integer, intent(in)	ixO,
		integer, intent(in)	L,
		type(state)	s
	)

calculate cell-center values from face-center values

Definition at line 4386 of file mod_mhd_phys.t.

◆ mhd_gamma2_alfven()

subroutine mod_mhd_phys::mhd_gamma2_alfven	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s, nw), intent(in)	w,
		double precision, dimension(ixo^s), intent(out)	gamma_A2
	)

Compute 1/(1+v_A^2/c^2) for Boris' approximation, where v_A is the Alfven velocity.

Definition at line 2217 of file mod_mhd_phys.t.

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◆ mhd_gamma_alfven()

double precision function, dimension(ixo^s) mod_mhd_phys::mhd_gamma_alfven	(	double precision, dimension(ixi^s, nw), intent(in)	w,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L
	)

Compute 1/sqrt(1+v_A^2/c^2) for Boris simplification, where v_A is the Alfven velocity.

Definition at line 2235 of file mod_mhd_phys.t.

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◆ mhd_get_a2max()

subroutine mod_mhd_phys::mhd_get_a2max	(	double precision, dimension(ixi^s, nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ndim), intent(inout)	a2max
	)

4th order

Definition at line 1072 of file mod_mhd_phys.t.

◆ mhd_get_cbounds()

subroutine mod_mhd_phys::mhd_get_cbounds	(	double precision, dimension(ixi^s, nw), intent(in)	wLC,
		double precision, dimension(ixi^s, nw), intent(in)	wRC,
		double precision, dimension(ixi^s, nw), intent(in)	wLp,
		double precision, dimension(ixi^s, nw), intent(in)	wRp,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		integer, intent(in)	idim,
		double precision, dimension(ixi^s), intent(inout)	cmax,
		double precision, dimension(ixi^s), intent(inout), optional	cmin
	)

Estimating bounds for the minimum and maximum signal velocities.

Definition at line 1192 of file mod_mhd_phys.t.

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◆ mhd_get_cmax()

subroutine mod_mhd_phys::mhd_get_cmax	(	double precision, dimension(ixi^s, nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		integer, intent(in)	idim,
		double precision, dimension(ixi^s), intent(inout)	cmax
	)

Calculate cmax_idim=csound+abs(v_idim) within ixO^L.

Definition at line 1059 of file mod_mhd_phys.t.

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◆ mhd_get_csound()

subroutine mod_mhd_phys::mhd_get_csound	(	double precision, dimension(ixi^s, nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		integer, intent(in)	idim,
		double precision, dimension(ixi^s), intent(out)	csound
	)

Calculate fast magnetosonic wave speed.

Definition at line 1282 of file mod_mhd_phys.t.

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◆ mhd_get_csound2()

subroutine, public mod_mhd_phys::mhd_get_csound2	(	double precision, dimension(ixi^s,nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s), intent(out)	csound2
	)

Calculate the square of the thermal sound speed csound2 within ixO^L. csound2=gamma*p/rho.

Definition at line 1462 of file mod_mhd_phys.t.

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◆ mhd_get_csound_prim()

subroutine mod_mhd_phys::mhd_get_csound_prim	(	double precision, dimension(ixi^s, nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		integer, intent(in)	idim,
		double precision, dimension(ixi^s), intent(out)	csound
	)

Calculate fast magnetosonic wave speed.

Definition at line 1332 of file mod_mhd_phys.t.

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◆ mhd_get_dt()

subroutine mod_mhd_phys::mhd_get_dt	(	double precision, dimension(ixi^s,1:nw), intent(in)	w,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, intent(inout)	dtnew,
		double precision, intent(in)	dx,
		double precision, intent(in)	D,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

If resistivity is not zero, check diffusion time limit for dt.

Definition at line 2868 of file mod_mhd_phys.t.

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◆ mhd_get_flux()

subroutine mod_mhd_phys::mhd_get_flux	(	double precision, dimension(ixi^s,nw), intent(in)	wC,
		double precision, dimension(ixi^s,nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		integer, intent(in)	idim,
		double precision, dimension(ixi^s,nwflux), intent(out)	f
	)

Calculate fluxes within ixO^L.

Definition at line 1493 of file mod_mhd_phys.t.

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◆ mhd_get_jambi()

subroutine mod_mhd_phys::mhd_get_jambi	(	double precision, dimension(ixi^s,nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(:^d&,:), intent(inout), allocatable	res
	)

Definition at line 3148 of file mod_mhd_phys.t.

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◆ mhd_get_jxbxb()

subroutine mod_mhd_phys::mhd_get_jxbxb	(	double precision, dimension(ixi^s,nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(:^d&,:), intent(out)	res
	)

Definition at line 1716 of file mod_mhd_phys.t.

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◆ mhd_get_p_total()

subroutine mod_mhd_phys::mhd_get_p_total	(	double precision, dimension(ixi^s,nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s), intent(out)	p
	)

Calculate total pressure within ixO^L including magnetic pressure.

Definition at line 1478 of file mod_mhd_phys.t.

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◆ mhd_get_pthermal()

subroutine, public mod_mhd_phys::mhd_get_pthermal	(	double precision, dimension(ixi^s,nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s), intent(out)	pth
	)

Calculate thermal pressure=(gamma-1)*(e-0.5*m**2/rho-b**2/2) within ixO^L.

Definition at line 1384 of file mod_mhd_phys.t.

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◆ mhd_get_tcutoff()

subroutine mod_mhd_phys::mhd_get_tcutoff	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		double precision, intent(out)	Tco_local,
		double precision, intent(out)	Tmax_local
	)

get adaptive cutoff temperature for TRAC (Johnston 2019 ApJL, 873, L22)

Definition at line 1095 of file mod_mhd_phys.t.

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◆ mhd_get_temperature_from_eint()

subroutine mod_mhd_phys::mhd_get_temperature_from_eint	(	double precision, dimension(ixi^s, 1:nw), intent(in)	w,
		double precision, dimension(ixi^s, 1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s), intent(out)	res
	)

Calculate temperature=p/rho when in e_ the internal energy is stored.

Definition at line 1436 of file mod_mhd_phys.t.

◆ mhd_get_temperature_from_etot()

subroutine mod_mhd_phys::mhd_get_temperature_from_etot	(	double precision, dimension(ixi^s, 1:nw), intent(in)	w,
		double precision, dimension(ixi^s, 1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s), intent(out)	res
	)

Calculate temperature=p/rho when in e_ the total energy is stored this does not check the values of mhd_energy and mhd_internal_e, mhd_energy = .true. and mhd_internal_e = .false. also check small_values is avoided.

Definition at line 1449 of file mod_mhd_phys.t.

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◆ mhd_get_v()

subroutine, public mod_mhd_phys::mhd_get_v	(	double precision, dimension(ixi^s,nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,ndir), intent(out)	v
	)

Calculate v vector.

Definition at line 1031 of file mod_mhd_phys.t.

◆ mhd_get_v_idim()

subroutine, public mod_mhd_phys::mhd_get_v_idim	(	double precision, dimension(ixi^s,nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		integer, intent(in)	idim,
		double precision, dimension(ixi^s), intent(out)	v
	)

Calculate v component.

Definition at line 1047 of file mod_mhd_phys.t.

◆ mhd_getdt_hall()

subroutine mod_mhd_phys::mhd_getdt_hall	(	double precision, dimension(ixi^s,1:nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, intent(in)	dx,
		double precision, intent(in)	D,
		double precision, intent(out)	dthall
	)

Definition at line 3172 of file mod_mhd_phys.t.

◆ mhd_getv_hall()

subroutine mod_mhd_phys::mhd_getv_hall	(	double precision, dimension(ixi^s,nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:3), intent(inout)	vHall
	)

Definition at line 3127 of file mod_mhd_phys.t.

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◆ mhd_handle_small_ei()

subroutine mod_mhd_phys::mhd_handle_small_ei	(	double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		integer, intent(in)	ie,
		character(len=*), intent(in)	subname
	)

handle small or negative internal energy

Definition at line 2276 of file mod_mhd_phys.t.

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◆ mhd_handle_small_values()

subroutine mod_mhd_phys::mhd_handle_small_values	(	logical, intent(in)	primitive,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		character(len=*), intent(in)	subname
	)

Definition at line 922 of file mod_mhd_phys.t.

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◆ mhd_kin_en()

double precision function, dimension(ixo^s), public mod_mhd_phys::mhd_kin_en	(	double precision, dimension(ixi^s, nw), intent(in)	w,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixo^s), intent(in), optional	inv_rho
	)

compute kinetic energy

Definition at line 3113 of file mod_mhd_phys.t.

◆ mhd_mag_en()

double precision function, dimension(ixo^s) mod_mhd_phys::mhd_mag_en	(	double precision, dimension(ixi^s, nw), intent(in)	w,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L
	)

Compute evolving magnetic energy.

Definition at line 3103 of file mod_mhd_phys.t.

◆ mhd_mag_en_all()

double precision function, dimension(ixo^s), public mod_mhd_phys::mhd_mag_en_all	(	double precision, dimension(ixi^s, nw), intent(in)	w,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L
	)

Compute 2 times total magnetic energy.

Definition at line 3075 of file mod_mhd_phys.t.

◆ mhd_mag_i_all()

double precision function, dimension(ixo^s) mod_mhd_phys::mhd_mag_i_all	(	double precision, dimension(ixi^s, nw), intent(in)	w,
		integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		integer, intent(in)	idir
	)

Compute full magnetic field by direction.

Definition at line 3089 of file mod_mhd_phys.t.

◆ mhd_modify_wlr()

subroutine mod_mhd_phys::mhd_modify_wlr	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, intent(in)	qt,
		double precision, dimension(ixi^s,1:nw), intent(inout)	wLC,
		double precision, dimension(ixi^s,1:nw), intent(inout)	wRC,
		double precision, dimension(ixi^s,1:nw), intent(inout)	wLp,
		double precision, dimension(ixi^s,1:nw), intent(inout)	wRp,
		type(state)	s,
		integer, intent(in)	idir
	)

Definition at line 3204 of file mod_mhd_phys.t.

◆ mhd_phys_init()

subroutine, public mod_mhd_phys::mhd_phys_init ( )

Definition at line 300 of file mod_mhd_phys.t.

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◆ mhd_physical_units()

subroutine mod_mhd_phys::mhd_physical_units ( )

Definition at line 697 of file mod_mhd_phys.t.

◆ mhd_to_conserved()

subroutine, public mod_mhd_phys::mhd_to_conserved	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s, nw), intent(inout)	w,
		double precision, dimension(ixi^s, 1:ndim), intent(in)	x
	)

Transform primitive variables into conservative ones.

Definition at line 762 of file mod_mhd_phys.t.

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◆ mhd_to_primitive()

subroutine, public mod_mhd_phys::mhd_to_primitive	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s, nw), intent(inout)	w,
		double precision, dimension(ixi^s, 1:ndim), intent(in)	x
	)

Transform conservative variables into primitive ones.

Definition at line 792 of file mod_mhd_phys.t.

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◆ mhd_update_faces()

subroutine mod_mhd_phys::mhd_update_faces	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, intent(in)	qt,
		double precision, intent(in)	qdt,
		double precision, dimension(ixi^s,1:nw), intent(in)	wprim,
		double precision, dimension(ixi^s,1:nwflux,1:ndim), intent(in)	fC,
		double precision, dimension(ixi^s,7-2*ndim:3), intent(inout)	fE,
		type(state)	sCT,
		type(state)	s
	)

Definition at line 3819 of file mod_mhd_phys.t.

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◆ mhd_write_info()

subroutine mod_mhd_phys::mhd_write_info ( integer, intent(in) fh )

Write this module's parameters to a snapsoht.

Definition at line 270 of file mod_mhd_phys.t.

◆ multiplyambicoef()

subroutine, public mod_mhd_phys::multiplyambicoef	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s), intent(inout)	res,
		double precision, dimension(ixi^s,1:nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

multiply res by the ambipolar coefficient The ambipolar coefficient is calculated as -mhd_eta_ambi/rho^2 The user may mask its value in the user file by implemneting usr_mask_ambipolar subroutine

Definition at line 2003 of file mod_mhd_phys.t.

◆ rhos_to_e()

subroutine mod_mhd_phys::rhos_to_e	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,nw)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x
	)

Convert entropy to energy.

Definition at line 1013 of file mod_mhd_phys.t.

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◆ sts_set_source_ambipolar()

subroutine mod_mhd_phys::sts_set_source_ambipolar	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(inout)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		double precision, dimension(ixi^s,1:nw), intent(inout)	wres,
		logical, intent(in)	fix_conserve_at_step,
		double precision, intent(in)	my_dt,
		integer, intent(in)	igrid,
		integer, intent(in)	nflux
	)

Sets the sources for the ambipolar this is used for the STS method.

at the corresponding indices store_flux_var is explicitly called for each of the fluxes one by one

Definition at line 1756 of file mod_mhd_phys.t.

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◆ update_faces_ambipolar()

subroutine mod_mhd_phys::update_faces_ambipolar	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, dimension(ixi^s,1:nw), intent(in)	w,
		double precision, dimension(ixi^s,1:ndim), intent(in)	x,
		double precision, dimension(ixi^s,1:3), intent(in)	ECC,
		double precision, dimension(ixi^s,7-2*ndim:3), intent(out)	fE,
		double precision, dimension(ixi^s,1:ndim), intent(out)	circ
	)

get ambipolar electric field and the integrals around cell faces

Definition at line 1866 of file mod_mhd_phys.t.

◆ update_faces_average()

subroutine mod_mhd_phys::update_faces_average	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, intent(in)	qt,
		double precision, intent(in)	qdt,
		double precision, dimension(ixi^s,1:nwflux,1:ndim), intent(in)	fC,
		double precision, dimension(ixi^s,7-2*ndim:3), intent(inout)	fE,
		type(state)	sCT,
		type(state)	s
	)

get electric field though averaging neighors to update faces in CT

Definition at line 3844 of file mod_mhd_phys.t.

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◆ update_faces_contact()

subroutine mod_mhd_phys::update_faces_contact	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, intent(in)	qt,
		double precision, intent(in)	qdt,
		double precision, dimension(ixi^s,1:nw), intent(in)	wp,
		double precision, dimension(ixi^s,1:nwflux,1:ndim), intent(in)	fC,
		double precision, dimension(ixi^s,7-2*ndim:3), intent(inout)	fE,
		type(state)	sCT,
		type(state)	s
	)

update faces using UCT contact mode by Gardiner and Stone 2005 JCP 205, 509

Definition at line 3948 of file mod_mhd_phys.t.

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◆ update_faces_hll()

subroutine mod_mhd_phys::update_faces_hll	(	integer, intent(in)	ixI,
		integer, intent(in)	L,
		integer, intent(in)	ixO,
			L,
		double precision, intent(in)	qt,
		double precision, intent(in)	qdt,
		double precision, dimension(ixi^s,7-2*ndim:3), intent(inout)	fE,
		type(state)	sCT,
		type(state)	s
	)

update faces

Definition at line 4122 of file mod_mhd_phys.t.

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Variable Documentation

◆ b0field_forcefree

logical, public, protected mod_mhd_phys::b0field_forcefree =.true.

B0 field is force-free.

Definition at line 181 of file mod_mhd_phys.t.

◆ boundary_divbfix

logical, dimension(2*^nd), public, protected mod_mhd_phys::boundary_divbfix =.true.

To control divB=0 fix for boundary.

Definition at line 175 of file mod_mhd_phys.t.

◆ boundary_divbfix_skip

integer, dimension(2*^nd), public, protected mod_mhd_phys::boundary_divbfix_skip =0

To skip * layer of ghost cells during divB=0 fix for boundary.

Definition at line 178 of file mod_mhd_phys.t.

◆ clean_initial_divb

logical, public mod_mhd_phys::clean_initial_divb = .false.

clean initial divB

Definition at line 169 of file mod_mhd_phys.t.

◆ divbwave

logical, public mod_mhd_phys::divbwave = .true.

Add divB wave in Roe solver.

Definition at line 166 of file mod_mhd_phys.t.

◆ e_

integer, public, protected mod_mhd_phys::e_

Index of the energy density (-1 if not present)

Definition at line 98 of file mod_mhd_phys.t.

◆ eaux_

integer, public, protected mod_mhd_phys::eaux_

Indices of auxiliary internal energy.

Definition at line 110 of file mod_mhd_phys.t.

◆ he_abundance

double precision, public, protected mod_mhd_phys::he_abundance =0.1d0

Helium abundance over Hydrogen.

Definition at line 172 of file mod_mhd_phys.t.

◆ mag

integer, dimension(:), allocatable, public, protected mod_mhd_phys::mag

Indices of the magnetic field.

Definition at line 104 of file mod_mhd_phys.t.

◆ mhd_4th_order

logical, public, protected mod_mhd_phys::mhd_4th_order = .false.

MHD fourth order.

Definition at line 86 of file mod_mhd_phys.t.

◆ mhd_adiab

double precision, public mod_mhd_phys::mhd_adiab = 1.0d0

The adiabatic constant.

Definition at line 124 of file mod_mhd_phys.t.

◆ mhd_ambipolar

logical, public, protected mod_mhd_phys::mhd_ambipolar = .false.

Whether Ambipolar term is used.

Definition at line 31 of file mod_mhd_phys.t.

◆ mhd_ambipolar_exp

logical, public, protected mod_mhd_phys::mhd_ambipolar_exp = .false.

Whether Ambipolar term is implemented explicitly.

Definition at line 37 of file mod_mhd_phys.t.

◆ mhd_ambipolar_sts

logical, public, protected mod_mhd_phys::mhd_ambipolar_sts = .false.

Whether Ambipolar term is implemented using supertimestepping.

Definition at line 34 of file mod_mhd_phys.t.

◆ mhd_divb_4thorder

logical, public, protected mod_mhd_phys::mhd_divb_4thorder = .false.

Whether divB is computed with a fourth order approximation.

Definition at line 151 of file mod_mhd_phys.t.

◆ mhd_energy

logical, public, protected mod_mhd_phys::mhd_energy = .true.

Whether an energy equation is used.

Definition at line 8 of file mod_mhd_phys.t.

◆ mhd_eta

double precision, public mod_mhd_phys::mhd_eta = 0.0d0

The MHD resistivity.

Definition at line 127 of file mod_mhd_phys.t.

◆ mhd_eta_ambi

double precision, public mod_mhd_phys::mhd_eta_ambi = 0.0d0

The MHD ambipolar coefficient.

Definition at line 136 of file mod_mhd_phys.t.

◆ mhd_eta_hyper

double precision, public mod_mhd_phys::mhd_eta_hyper = 0.0d0

The MHD hyper-resistivity.

Definition at line 130 of file mod_mhd_phys.t.

◆ mhd_etah

double precision, public mod_mhd_phys::mhd_etah = 0.0d0

TODO: what is this?

Definition at line 133 of file mod_mhd_phys.t.

◆ mhd_gamma

double precision, public mod_mhd_phys::mhd_gamma = 5.d0/3.0d0

The adiabatic index.

Definition at line 121 of file mod_mhd_phys.t.

◆ mhd_glm

logical, public, protected mod_mhd_phys::mhd_glm = .false.

Whether GLM-MHD is used.

Definition at line 46 of file mod_mhd_phys.t.

◆ mhd_glm_alpha

double precision, public mod_mhd_phys::mhd_glm_alpha = 0.5d0

GLM-MHD parameter: ratio of the diffusive and advective time scales for div b taking values within [0, 1].

Definition at line 71 of file mod_mhd_phys.t.

◆ mhd_gravity

logical, public, protected mod_mhd_phys::mhd_gravity = .false.

Whether gravity is added.

Definition at line 25 of file mod_mhd_phys.t.

◆ mhd_hall

logical, public, protected mod_mhd_phys::mhd_hall = .false.

Whether Hall-MHD is used.

Definition at line 28 of file mod_mhd_phys.t.

◆ mhd_internal_e

logical, public, protected mod_mhd_phys::mhd_internal_e = .false.

Whether internal energy is solved instead of total energy.

Definition at line 64 of file mod_mhd_phys.t.

◆ mhd_magnetofriction

logical, public, protected mod_mhd_phys::mhd_magnetofriction = .false.

Whether magnetofriction is added.

Definition at line 43 of file mod_mhd_phys.t.

◆ mhd_n_tracer

integer, public, protected mod_mhd_phys::mhd_n_tracer = 0

Number of tracer species.

Definition at line 89 of file mod_mhd_phys.t.

◆ mhd_particles

logical, public, protected mod_mhd_phys::mhd_particles = .false.

Whether particles module is added.

Definition at line 40 of file mod_mhd_phys.t.

◆ mhd_radiative_cooling

logical, public, protected mod_mhd_phys::mhd_radiative_cooling = .false.

Whether radiative cooling is added.

Definition at line 19 of file mod_mhd_phys.t.

◆ mhd_solve_eaux

logical, public, protected mod_mhd_phys::mhd_solve_eaux = .false.

Whether auxiliary internal energy is solved.

Definition at line 61 of file mod_mhd_phys.t.

◆ mhd_thermal_conduction

logical, public, protected mod_mhd_phys::mhd_thermal_conduction = .false.

Whether thermal conduction is used.

Definition at line 11 of file mod_mhd_phys.t.

◆ mhd_trac

logical, public, protected mod_mhd_phys::mhd_trac = .false.

Whether TRAC method is used.

Definition at line 49 of file mod_mhd_phys.t.

◆ mhd_trac_finegrid

integer, public, protected mod_mhd_phys::mhd_trac_finegrid =4

Distance between two adjacent traced magnetic field lines (in finest cell size)

Definition at line 58 of file mod_mhd_phys.t.

◆ mhd_trac_mask

double precision, public, protected mod_mhd_phys::mhd_trac_mask = 0.d0

Height of the mask used in the TRAC method.

Definition at line 55 of file mod_mhd_phys.t.

◆ mhd_trac_type

integer, public, protected mod_mhd_phys::mhd_trac_type =1

Which TRAC method is used.

Definition at line 52 of file mod_mhd_phys.t.

◆ mhd_viscosity

logical, public, protected mod_mhd_phys::mhd_viscosity = .false.

Whether viscosity is added.

Definition at line 22 of file mod_mhd_phys.t.

◆ mom

integer, dimension(:), allocatable, public, protected mod_mhd_phys::mom

Indices of the momentum density.

Definition at line 95 of file mod_mhd_phys.t.

◆ p_

integer, public, protected mod_mhd_phys::p_

Index of the gas pressure (-1 if not present) should equal e_.

Definition at line 101 of file mod_mhd_phys.t.

◆ paux_

integer, public, protected mod_mhd_phys::paux_

Definition at line 111 of file mod_mhd_phys.t.

◆ psi_

integer, public, protected mod_mhd_phys::psi_

Indices of the GLM psi.

Definition at line 107 of file mod_mhd_phys.t.

◆ rho_

integer, public, protected mod_mhd_phys::rho_

Index of the density (in the w array)

Definition at line 92 of file mod_mhd_phys.t.

◆ source_split_divb

logical, public, protected mod_mhd_phys::source_split_divb = .false.

Whether divB cleaning sources are added splitting from fluid solver.

Definition at line 67 of file mod_mhd_phys.t.

◆ tcoff_

integer, public, protected mod_mhd_phys::tcoff_

Index of the cutoff temperature for the TRAC method.

Definition at line 114 of file mod_mhd_phys.t.

◆ tracer

integer, dimension(:), allocatable, public, protected mod_mhd_phys::tracer

Indices of the tracers.

Definition at line 118 of file mod_mhd_phys.t.

◆ tweight_

integer, public, protected mod_mhd_phys::tweight_

Definition at line 115 of file mod_mhd_phys.t.

◆ type_ct

character(len=std_len), public, protected mod_mhd_phys::type_ct = 'uct_contact'

Method type of constrained transport.

Definition at line 148 of file mod_mhd_phys.t.

◆ typedivbfix

character(len=std_len), public, protected mod_mhd_phys::typedivbfix = 'linde'

Method type to clean divergence of B.

Definition at line 145 of file mod_mhd_phys.t.

◆ usr_mask_ambipolar

procedure (mask_subroutine), pointer, public mod_mhd_phys::usr_mask_ambipolar => null()

Definition at line 237 of file mod_mhd_phys.t.

Functions/Subroutines

Variables

Detailed Description

Function/Subroutine Documentation

◆ add_source_ambipolar_internal_energy()

◆ add_source_b0split()

◆ add_source_glm()

◆ add_source_hyperres()

◆ add_source_janhunen()

◆ add_source_linde()

◆ add_source_powel()

◆ add_source_res1()

◆ add_source_res2()

◆ b_from_vector_potential()

◆ boris_add_source()

◆ e_to_rhos()

◆ fixdivb_boundary()

◆ get_ambipolar_dt()

◆ get_ambipolar_electric_field()

◆ get_current()

◆ get_divb()

◆ get_flux_on_cell_face()

◆ get_lorentz()

◆ get_normalized_divb()

◆ get_resistive_electric_field()

◆ internal_energy_add_source()

◆ mhd_add_source()

◆ mhd_add_source_geom()

◆ mhd_angmomfix()

◆ mhd_boundary_adjust()

◆ mhd_check_params()

◆ mhd_check_w()

◆ mhd_clean_divb_multigrid()

◆ mhd_e_to_ei()

◆ mhd_e_to_ei_aux()

◆ mhd_ei_to_e()

◆ mhd_ei_to_e_aux()

◆ mhd_energy_synchro()

◆ mhd_face_to_center()

◆ mhd_gamma2_alfven()

◆ mhd_gamma_alfven()

◆ mhd_get_a2max()

◆ mhd_get_cbounds()

◆ mhd_get_cmax()

◆ mhd_get_csound()

◆ mhd_get_csound2()

◆ mhd_get_csound_prim()

◆ mhd_get_dt()

◆ mhd_get_flux()

◆ mhd_get_jambi()

◆ mhd_get_jxbxb()

◆ mhd_get_p_total()

◆ mhd_get_pthermal()

◆ mhd_get_tcutoff()

◆ mhd_get_temperature_from_eint()

◆ mhd_get_temperature_from_etot()

◆ mhd_get_v()

◆ mhd_get_v_idim()

◆ mhd_getdt_hall()

◆ mhd_getv_hall()

◆ mhd_handle_small_ei()

◆ mhd_handle_small_values()

◆ mhd_kin_en()

◆ mhd_mag_en()

◆ mhd_mag_en_all()

◆ mhd_mag_i_all()

◆ mhd_modify_wlr()

◆ mhd_phys_init()

◆ mhd_physical_units()

◆ mhd_to_conserved()

◆ mhd_to_primitive()

◆ mhd_update_faces()

◆ mhd_write_info()

◆ multiplyambicoef()

◆ rhos_to_e()

◆ sts_set_source_ambipolar()

◆ update_faces_ambipolar()

◆ update_faces_average()

◆ update_faces_contact()

◆ update_faces_hll()